---
title: "MathJax 2"
author: "Erin M. Ochoa"
date: "04/08/2019"
output: 
  flexdashboard::flex_dashboard:
    storyboard: true
    theme: flatly
    source_code: embed
  mathjax: https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-MML-AM_CHTML
---

```{r setup}
library(sf)
library(sp)
library(spdep)
library(rgdal)
#library(leaflet)
library(mapview)
#library(htmltools)
library(tidyverse)
#library(RColorBrewer)
```

```{r style_mathjax}
# Use MathJax; tweak the nav bar; define styles for text slides
# https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/latest.js?config=TeX-MML-AM_CHTML
```




### 1. Introduction {data-commentary-width=450}

```{r frame1}
```

***

title
body
body
body
body




caption –




### Terms Defined {data-commentary-width=0}

Calculating the Mean Squared Error
for a SKATER Model




Euclidean dissimilarity, $d$:

For two polygons, $p_i$ and $p_j$, the Euclidean distance in high-dimensional attribute space (for variables $1$ to $n$) is:
$$\begin{equation}
d(p_{i},p_{j}) = \sqrt{(p_{i1} - p_{j1})^2 + (p_{i2} - p_{j2})^2 + ... + (p_{in} - p_{jn})^2}
\end{equation}$$


Mean intraregion dissimilarity, $D$:

For a region $R$ with $m$ polygons ($p$), add up all the pairwise Euclidean dissimilarities for the region and divide by the number of polygons in the region:
$$\begin{equation}
D(R) = 
\frac{\sum\limits_{i=1}^{m-1}\sum\limits_{j=i+1}^m d(p_{i},p_{j})}{m}
\end{equation}$$



Error, $E$:

For a region, $R$, with $m$ polygons ($p$), the error, $E$, is found by taking the sum of each pairwise Euclidean distance ($d_{ij}$) minus the mean intraregion dissimilarity ($D$):
$$\begin{equation}
E(R) = \sum\limits_{i=1}^{m-1}\sum\limits_{j=i+1}^m \Big(d(p_{i},p_{j}) - D(R)\Big)
\end{equation}$$



Mean squared error, $MSE$:

For a SKATER model with $K$ regions ($R$), the mean squared error, $MSE$, is the average squared error for all the regions in the model:
$$\begin{equation}
MSE(K) = 
\frac{\sum\limits_{k=1}^K E(R_k)^2}{K}
\end{equation}$$